Work Experience (Relevant)*: National Institute of Health (NIH) Biosketch
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/download-c2eee24cf6592f29.jpeg)
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/download-dddcbda98b0d69c5.jpeg)
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/Screenshot-2024-05-03-at-2.58.28 AM-8645ec70a7ab1082-300x90.png)
2020: Yale University, School of Medicine, Department of Genetics, Yale Center for Genome Analysis (YCGA) New Haven, USA. Title: Associate Research Scientist (https://medicine.yale.edu/profile/shrikant_pawar/), current projects in collaboration with Dr. Christian Griñán Ferré, Univesity of Barcelona, Spain; Dr. Kleinstein, Yale University, New Haven, Connecticut, USA; Dr. Uduman, Dana Farber Harvard, Cambridge, MA, USA; Dr. George Tegos, Gamma Therapeutics; Dr. Lahiri, Sunway University, Malaysia; Dr. Allen. Bale, Dr. Hui. Zhang, DNA Diagnostic Lab at Yale University, New Haven, Connecticut, USA; Dr. Insoo. Kang; Dr. Kei-Hoi Chung; and Dr. Leying Guan at Yale University, New Haven, Connecticut, USA
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/Screenshot-2024-05-03-at-2.59.19 AM-b62530b64be0fd1b-292x300.png)
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/Screenshot-2024-05-03-at-2.59.57 AM-c494b221d93435fb-300x101.png)
2019: Synergy (Plus+) LLC.P.O. Atlanta, Georgia, USA. Title: Data Scientist, worked on web development, statistical and data mining techniques for platform optimization.
2018: Georgia State University, Department of Biology, Atlanta, USA. Title: Instructor of Record. Next generation sequencing (NGS) analysis in R, BIOL6930 (Introduction to R, Microarrays: gene expression analysis, algorithms, databases, data visualization: heat maps, pie-charts, Venn diagrams.), Introduction to operating server and High Performance Computing cluster. Current projects in collaboration with Dr. Eichenbaum, Dr. Aneja, Dr. Charles Derby, & Dr. Chung-Dar Lu.
2018: Georgia State University, Department of Computer Science & Biology, Atlanta, USA. Title: Ahmed T. Abdelal Fellow in Molecular Genetics and Biotechnology
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/Seal_of_Free_University_of_Berlin.svg-84e89a595a951116-300x300.png)
![](https://campuspress.yale.edu/shrikantpawar/files/2024/05/download-cc7d51b292d6c03b.png)
Projects:
You can find all my projects and code repositories at Github following the link: https://github.com/spawar2
Important & Interesting project mentions:
- Android utility app: This project was focused on development of android application with several use case utilities ####https://github.com/spawar2/Android-Utility-App-####[Java: android.content.Context, android.support.test.InstrumentationRegistry, android.support.test.runner.AndroidJUnit4, org.junit.Test, org.junit.runner.RunWith] https://csds.gsu.edu/^^^
- A PHP, MySQL based online shopping portal: This project was focused on development of online shopping portal similar to Amazon and ebay ####https://github.com/spawar2/Final_Project_PHP_SQL####https://vimeo.com/356775874?activityReferer=1 [PHP, CSS, HTML, JavaScript: mysql_import.sql] https://csds.gsu.edu/^^^
- Machine learning for selection and classification of HIV PR resistance:
This project was focused on applying neural network architecture on HIV deep sequencing data, collaboration with Dr. Harrison and Dr. Weber, Georgia State University, Atlanta, USA https://csds.gsu.edu/profile/robert-harrison/ https://cas.gsu.edu/profile/irene-weber/ ####https://github.com/spawar2/HIV_Machine_Learning_Techniques#### [MATHLAB, R, Python: numpy, sklearn.model, pylab, sklearn.decomposition] BioMed Central BMC Bioinformatics Paper Poster Link^^^
- Java-platform-to-create-logic-circuit to evaluate-bolean-expression: This project was focused on developing a java platform to evaluate bolean expressions from computer architecture ####https://github.com/spawar2/Computer-Architecture–Java-platform-to-create-logic-circuit–evaluate-bolean-expression#### https://csds.gsu.edu/^^^
- Java_SQL_MiceExperiment_Record_Tracking_Software: This project was focused on development of a java gui with record tracking features, collaboration with Dr. Batra, Georgia State University, Atlanta, USA https://www.linkedin.com/in/harshul-batra/ ####https://github.com/spawar2/Java_SQL_MiceExperiment_Record_Tracking_Software#### [Java: javax.swing.JFrame, javax.swing.JOptionPane, javax.swing.table.DefaultTableModel, javax.swing.table.TableModel, java.sql., javax.swing., net.proteanit.sql.DbUtils, java.sql.Connection, java.sql.Statement, java.sql.SQLException, java.util.ArrayList] Future Science OA Paper Demo App^^^
- A PHP, MySQL based electronic record keeping cloud system: This project was focused on developing electronic record keeping cloud system, collaboration with Dr. Batra, Georgia State University, Atlanta, USA https://www.linkedin.com/in/harshul-batra/
####https://github.com/spawar2/Electronic-Cloud-Notebook–PHP–MySQL–Apache#### Journal of Engineering and Technology Research Paper Demo^^^ - Glycan-to-DNA-Mapping-Web-Server: This project was focused on developing a python based web platform to handle Glycan-to-DNA-Mapping quiries, collaboration with Dr. Shukkor, Georgia State University, Atlanta, USA ####https://github.com/spawar2/Glycan-to-DNA-Mapping-Web-Server#### [Python] bioRxiv Paper Demo^^^
- Patient flow simulation in EMS department: This project was focused on developing a devs-java based EMS simulation to address ED over crowding, collaboration with Dr. Stanam, University of Iowa, Iowa City, USA https://www.linkedin.com/in/aditya-stanam-07bbb819/ ####https://github.com/spawar2/Devs_Java_Patient_Flow_SimulationinEMS#### [Java: DEVSJAVALab, simView., java.awt., java.io., genDevs.modeling., genDevs.simulation., GenCol.] Springer Bioinformatics and Biomedical Engineering Paper Demo^^^
- Head-Neck-Cancer–ROC–SVM–KM–Expression-Analysis: This project was focused on support vector machine analysis of HNC patients, collaboration with Dr. Stanam, University of Iowa, Iowa City, USA https://www.linkedin.com/in/aditya-stanam-07bbb819/^^^
####https://github.com/spawar2/Head-Neck-Cancer–ROC–SVM–KM–Expression-Analysis#### Springer Journal of Maxillofacial and Oral Surgery Paper - Interleukin_Pathway_Survival_Gene_Expression_Analysis:
This project was focused on gene expression analysis of Interleukin_Pathway genes American Association of Cancer Research AACR Paper Poster Link ####https://github.com/spawar2/Interleukin_Pathway_Survival_Gene_Expression_Analysis https://sites.gsu.edu/bgsa/ ####, collaboration with Dr. Stanam, University of Iowa, Iowa City, USA https://www.linkedin.com/in/aditya-stanam-07bbb819/ [R: Biobase, GEOquery, survminer, survival]^^^
- Face-Recognition-Python: This project was focused on utilizing open CV python for facial recognition ####https://github.com/spawar2/Face-Recognition-Python#### [Python: cv2, sys]^^
- Forcasting-pipelines: This project was focused on developing 3 Forcasting-pipelines with time series data ####https://github.com/spawar2/Forcasting-pipelines#### [R: ForeCA] Springer Proceedings of Sixth International Congress on Information and Communication Technology Paper^^^
- Random-Forest-for-Ovarian-Breast-Cancer-Patients:
[**2023: 1]
This project was focused on developing a biomarker utilizing random forest technique ####https://github.com/spawar2/Random-Forest-on-Ovarian-Breast-Cancer-Patients####, collaboration with Dr. Lahiri, Sunway University, Malaysia https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en
[R: GEOquery, Biobase, preprocessCore, multiClust] Poster Link Presentation PPT^^^
- GeneSearch: This project was focused on developing a java gui to search genes from public repositories, collaboration with Dr. Chung-dar Lu, Georgia State University, Atlanta, USA https://www.researchgate.net/profile/Chung-Dar-Lu
####https://github.com/spawar2/GeneSearch#### Java^^^ - Clustering_Analysis_Cancer_Techniques:
This project was focused on developing a biomarker tool utilizing clustering techniques ####https://github.com/spawar2/Clustering_Analysis_Cancer#### [R: GEOquery, Biobase, preprocessCore, multiClust, ctc, gplots, dendextend, graphics, grDevices, amap] Springer Bioinformatics and Biomedical Engineering Paper Poster Link Presentation PPT^^
- Image augmentations: https://github.com/spawar2/NLP-Challenge [Python: keras.datasets, mnist, models, layers, tensorflow, Sequential, Dense, Conv2D, Dropout, Flatten, MaxPooling2D]^^
- Electric scooter for overcoming transportation and pollution problems:
[*2021:4] Springer Sustainable Intelligent Systems ####https://devpost.com/software/ebird####. Prototype selected for Collegiate Cup Competition and TYE University Competition Qualifying Round 2019 and Entrepreneurship and Innovation Institute (ENI) Mentor Program Poster^^^
- Random_Forest_Classfication_Renal_Cell_Carcinoma: This project was focused on developing a biomarker tool utilizing random forest Association of Computing Machinery ACM Paper ####https://github.com/spawar2/Random_Forest_Renal_Cell_Carcinoma#### [R: forcats, randomForest], collaboration with Dr. Lahiri, Sunway University, Malaysia https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en https://github.com/rushikeshchopaderc https://in.linkedin.com/in/rushikesh-chopade-88470615b This project in collaboration with Rushikesh Chopade Undergraduate student: Indian Institute of Technology (IIT), Kharagpur, India. Presently with ChestAi, https://www.chestai.org/ Presentation PPT^
- COVID19-Temperature-Dashboard: This project was focused on understanding relationship between COVID19-Temperature ####https://github.com/spawar2/COVID19-Temperature-Dashboard#### [R:shiny, highcharter, dplyr, UI, Server] medRxiv Paper Demo^
https://yalegenomics.shinyapps.io/deployment/?_ga=2.91441946.1803750112.1677552931-1693957918.1677552931
- Regression-Analysis-Alzheimers-Disease: This project was focused on utilizing machine learning tools for feature classification in Alzheimers ####https://github.com/spawar2/Regression-Alzheimers-Disease#### [R: MASS, car, glm.predict]^^^
- Machine Learning Classification Pulmonary-Embolism-Master: This project was focused on utilizing machine learning tools for feature classification in Embolism ####https://github.com/spawar2/Pulmonary-Embolism-Master#### [Python: numpy, sklearn, pandas, os, MATPLOTLIB]^^^
- DARTO: Program to identify orthologs for genes: ####https://github.com/spawar2/DARTO#### [Python: os, Bio.Blast, ssl, tkinter, askopenfilename, filedialog], collaboration with Dr. Lahiri, Sunway University, Malaysia https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en^^^
- Neural-Networks-for-Ovarian-Carcinomas: This project was focused on utilizing machine learning tools for feature classification in Ovarian-Carcinomas: Springer Intelligent Sustainable Systems Paper ####https://github.com/spawar2/Neural-Networks-for-Ovarian-Carcinomas#### [R: curatedOvarianData, tidyverse, boot, plyr, e1071] Poster Link Presentation PPT^^
-
Chest-X-ray-Neural-Nets: This project was focused on utilizing CNN’s for X-ray image classification: https://github.com/spawar2/Chest-X-ray-Neural-Nets Demo Poster Link Product [*2023:4, 9; 2021: 17, 23] [**23, 29, 30, 37, 42] [Python: fastai.vision, torchvision.models, pandas, Path]
[https://github.com/rushikeshchopaderc https://in.linkedin.com/in/rushikesh-chopade-88470615b https://github.com/SurajK7/ https://in.linkedin.com/in/surajkumar1004 This project in collaboration with **Rushikesh Chopade, Suraj Kumar Undergraduate student: Indian Institute of Technology (IIT), Kharagpur, India. Project: CHEST-AI: AI tool for detection of lung diseases from chest X- ray data (Spring 2021). Springer Computational Vision and Bio-Inspired Computing, Springer Intelligent Sustainable Systems, bioRxiv Paper Paper Paper Paper Paper https://link.springer.com/chapter/10.1007/978-981-19-9819-5_49 https://link.springer.com/chapter/10.1007/978-981-19-7660-5_7 https://www.researchsquare.com/article/rs-1129014/latest.pdf https://www.biorxiv.org/content/10.1101/2021.09.21.461307v1.abstract https://dl.acm.org/doi/abs/10.1145/3469213.3469214 http://20.169.253.49:5001/login https://aws.amazon.com/marketplace/seller-profile?id=seller-b6otd3wry7lkk https://bpb-us-w2.wpmucdn.com/campuspress.yale.edu/dist/7/3679/files/2023/10/ChestAi-300×167.png] collaboration with Dr. Narayanan, Johnson & Johnson, Pennsylvania, USA https://anandnarayananphd.com/ (National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR) RII Track-1 award funded project Role: Co-PI, (direct, 100%)) Poster Presentation PPT PPT^^
-
BASELINe-Data: This project was focused on utilizing Bayesian estimation techniques for B and T cell profiling: https://github.com/spawar2/BASELINe-Data Demo [R Shiny: Tidyverse, UI, Server], collaboration with Dr. Kleinstein, Yale University, New Haven, Connecticut, USA https://medicine.yale.edu/lab/kleinstein/^
https://yalegenomics.shinyapps.io/myapp/?_ga=2.91441946.1803750112.1677552931-1693957918.1677552931
-
Single-Cell-RNA-Analysis: This project was focused on single cell analysis techniques: https://github.com/spawar2/Single-Cell-RNA-Analysis & https://github.com/spawar2/Single-Cell-Analysis [Python: pandas, numpy, matplotlib.pyplot, string, anndata, defaultdict, OrderedDict, sklearn.preprocessing, TruncatedSVD], collaboration with Dr. Kozma, Georgia State University, Atlanta, USA https://loop.frontiersin.org/people/2548907/overview^^^
- CellLine Dependency Analysis: https://github.com/spawar2/CellLine-Dependency [R: DESeq2]^
-
COVID-SwabSeq-Testing-Run: This project was focused on testing Swab-Seq technique on COVID swab tests: https://github.com/spawar2/COVID-SwabSeq-Testing-Run [R: ggbeeswarm, MASS, speedglm, furrr, readxl, magrittr, tidyverse]^
-
Object-Recognition-Python: This project was focused on object recognition using OpenCV: https://github.com/spawar2/Object-Recognition-Python bioRxiv Paper Demo Product
[Python: numpy, os, urllib, sys, tarfile, tensorflow, zipfile, cv2, csv, time, collections, defaultdict, StringIO, matplotlib, PIL]^^
-
Quasi-quantum model for potentization: This project was focused on potentization analysis: https://github.com/spawar2/Shrodinger-Equation [R] Git PPT^^^
-
Gene set enrichment analysis for RNA expression data: https://github.com/spawar2/Fold-Change-Comparisons [R: GenomicFeatures, clusterProfiler, enrichplot, ggplot2]^^^
-
Kivy app interface development in R: https://github.com/spawar2/Kivy-GUI-R [Python: kivy.app, kivy.lang, Builder, Screen, ObjectProperty, Popup, Label, DataBase]^
-
Structural–variant-Detection tool: https://github.com/spawar2/Structural-variant-Detection [R]^
-
Program to Count-relative-frequency-of-amino-acids: https://github.com/spawar2/Count-relative-frequency-of-amino-acids [Python: itertools, product, combinations, Counter]^^
-
Text to voice conversion application: https://github.com/spawar2/Text-to-Voice-Application [Python: os, numpy, shlex, subprocess, sys, wave, deepspeech, Model, printVersions, timeit]^^
-
CT brain hemorrhage training: https://github.com/spawar2/CNN_Training [Python: matplotlib.pyplot, torch, time, numpy, collections, OrderedDict, torch.autograd, PIL, lr_scheduler, copy, json, os]^^
-
Evaluating performance of regression and classification models with prognostic markers in lung carcinomas: https://github.com/spawar2/Regression-Lung-Carcinoma^^
Paper [R: randomForest, caret], collaboration with Dr. Lahiri, Sunway University, Malaysia https://scholar.google.co.in/citations?user=cZaBPOoAAAAJ&hl=en
Springer Bioinformatics and Biomedical Engineering Paper
-
Hemorhage–Detection-CT-Scan: https://github.com/spawar2/Hemorhage-Detection-CT-Scan
[**33] Poster Springer [Python: numpy, pandas, pydicom, matplotlib.pyplot, math, cv2, tensorflow, keras]
[https://github.com/CoolSubash https://np.linkedin.com/in/subash-neupane-aa07ba228?trk=public_profile_browsemap This project in collaboration with **Subash Neupane, (Claflin University, Orangeburg, South Carolina, USA Seed award funded project Role: PI, (direct, 100%)) Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). Utilization of Machine Learning Techniques for Aiding Detection of Ischemic Stroke Lesion, Infarct Volumes, and Small-artery Occlusion https://www.claflin-computation.com/_files/ugd/81dd80_e12daf8e87c348c5a9347af693993739.pdf] Project: https://campuspress.yale.edu/shrikantpawar/files/2024/04/Seed-Report-2023-d26fc72513e269e3.docx^^
- Anovos feature engineering process to increase efficiency tool contributor: https://github.com/spawar2/Anovos-Contributor-User^
-
Techniques of brain segmentation from CT scan: https://github.com/spawar2/Image_Segmentation [Python: pydicom, numpy, cv2, os, math, pylab, matplotlib, scipy, ndimage, skimage, morphology]^^
-
Stroke risk stratification with neural nets: [*2024:9][**2024:36]
https://github.com/spawar2/Neural-Networks-Stroke Springer Intelligent Sustainable Systems Paper [R: neuralnet] Presentation PPT (Claflin University Orangeburg, South Carolina, USA, seed funded project) Role: PI, (direct, 100%)^^
-
System-Level-Programming: https://github.com/spawar2/System-Level-Programming, https://csds.gsu.edu/^^^
- Data-Structures: https://github.com/spawar2/Data-Structures, https://csds.gsu.edu/^^^
- CS-Introduction: https://github.com/spawar2/CS-Introduction, https://csds.gsu.edu/^^^
- Advanced-Graphic-Algorithms: https://github.com/spawar2/Advanced-Graphic-Algorithms, https://csds.gsu.edu/^^^
- Fundamentals of Bioinformatics: https://github.com/spawar2/Bioinformatics-scripts, https://csds.gsu.edu/^^^
- Nano-particles property prediction with random forests: https://github.com/spawar2/RF-ENP [R Shiny: MissForest, randomForest, caret, UI, Server], collaboration with Dr. Swinton, Kean University https://www.kean.edu/directory/derrick-swinton https://yalegenomics.shinyapps.io/appenp/?_ga=2.91441946.1803750112.1677552931-1693957918.1677552931^^
- Claflin University SMART–HOME: https://github.com/spawar2/SMART-HOME-CLAFLIN Poster Poster [**30][**39] [R: shiny, DT], collaboration with Dr. Liles, Claflin University, Orangeburg, South Carolina, USA http://www.drkliles.com/STARlab/^^
https://yalegenomics.shinyapps.io/app-smart-home/
SC Independent Colleges & Universities (SCICU): https://scicu.org/events/scicu-undergraduate-student-faculty-research-symposium-4/ [https://github.com/eniolla https://www.linkedin.com/in/priscilla-fatokun-35007119a https://github.com/mayor90/thesis Thesis presentation: https://youtu.be/NUPr-kXKCaU https://campuspress.yale.edu/shrikantpawar/files/2023/12/SCICU-research-poster.pptx This project in collaboration with **Mr. Owalabi Oluwamayowa (South Carolina Independent Colleges & Universities SCICU award funded project Role: PI, (direct, 100%)), **Priscilla E. Fatokun (South Carolina Independent Colleges & Universities SCICU award funded project Role: PI, (direct, 100%)), Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). Project: SMART-HOME proposal “collection and processing of health-care data for African-American subjects from wrist wearable devices. https://campuspress.yale.edu/shrikantpawar/files/2023/12/SCICU-research-poster.pptx https://campuspress.yale.edu/shrikantpawar/files/2024/02/Priscilla-Research-Presentation-0b920a0c624e2982.pptx] Project: https://www.claflin-computation.com/_files/ugd/81dd80_88f5decdd4c44ce497f7f2f71018c63b.docx?dn=Building%20a%20Responsive%20SmartHome.docx PPT: https://www.claflin-computation.com/_files/ugd/81dd80_65cf61cfe8b8429fae9cfcb31f099f15.pptx?dn=Building%20a%20Responsive%20Smart%20Home.pptx Project: https://www.claflin-computation.com/_files/ugd/81dd80_5add3a1670ff4c68a3cb307ddbe7e811.docx?dn=Priscilla%20Fatokun%27s%20Thesis.docx PPT: https://www.claflin-computation.com/_files/ugd/81dd80_9ea49363c6704e198ccbd724c57a3fdc.pptx?dn=Priscilla%20Fatokun%27s%20Presentation.pptx
- Blood cancer expression analysis: https://github.com/spawar2/Blood-Cancer-Analysis [This project was in collaboration with Ms. A Agrawal, University of Connecticut, Special Program in Medicine (BS/MD), Experiential Learning Program Project: Identifying biomarkers between lymphoma and leukemia cancer patients (Fall 2021). CT STEM and Norwalk Science Fair (Poster)] [R: Affy, Limma] Title III and Special Initiative Office SEED Funding, Claflin University, Orangeburg, South Carolina, USA: Biomarker Identification for the Diagnosis of Chronic Lymphocytic Leukemia (CLL) (2024): (direct and indirect) Github Students involved **Lierra Rivera Presently doctoral student at Clemson University, Bioengineering Program, **Germari Cull, **Mr. Adrian Lockwood and **Kalyn Wesby. Role: PI, (direct, 100%)^^
-
ChatGPT testing: https://github.com/spawar2/ChatGPT-Testing [https://github.com/bpritish https://www.linkedin.com/in/pritishbhave This project in collaboration with P Bhave, Senior Software Engineer, Walmart. Analyze ChatGPT’s codex to determine it’s viability to identify basic issues with provided Python code using OpenAI’s code model, current `code-cushman-001`] [Python: os, time, datetime, openai] [**44] Overview PPT Presentation^^
-
NSF National Science South Carolina Established Program for Stem Cooperative Research (SC EPSCoR) Foundation-RET Institutional Development Award (IDeA) Networks of Biomedical Research Excellence (INBRE) Research Education of Teachers: Machine learning applications for studying check-point genes expressed in ten different human cancer types. https://github.com/spawar2/NSF-INBRE-EPSCoR-RET [ https://github.com/ethaharikanaidu This project in collaboration with *******Harika Baidu, teacher at Bamberg Ehrhardt High School (Summer 2022). Machine learning applications for studying check-point genes expressed in ten different human cancer types. Machine learning applications for studying check-point genes expressed in human Ovarian cancers. https://www.claflin-computation.com/_files/ugd/81dd80_1ad94ed63c6a49c887177419bdb46567.docx?dn=Etha%20project%20report.docx] [R: edgeR, hgu133plus2.db, tidyverse]^^
-
TF–IDF-term frequency–inverse document frequency: https://github.com/spawar2/term-frequency-inverse-document-frequency [Python]^^^
-
NSF National Science Foundation SCICU: Natural Language Processing (NLP) for optimizing career advancement prospects. https://github.com/spawar2/NSF-SCICU-2022. Claflin University, Orangeburg, South Carolina, USA student Johsua Kiprono, Presently software engineer at Atlassian. App Deploy: Project: https://www.claflin-computation.com/_files/ugd/81dd80_0fc28fef39d94861ad5b18e83391a167.docx?dn=JoshuaKipronoThesisDraft.docx PPT: https://www.claflin-computation.com/_files/ugd/81dd80_8bb6fb5a75384bd5888fd7d8f43d51af.pdf https://joshuakiplimo-resparse-resumematch-6a8pxp.streamlit.app/ Thesis presentation: https://youtu.be/Jx6Q7TaISIU
(South Carolina Independent Colleges & Universities SCICU award funded Role: PI, (direct, 100%) project)^^
- Single-Cell-MA-plots-Crustacean-Species: https://github.com/spawar2/Single-Cell-MA-plots-Crustacean-Species Public Library of Science PLoS ONE Paper [R: Deseq2, ggplots], collaboration with Dr. Kozma, Georgia State University, Atlanta, USA https://loop.frontiersin.org/people/2548907/overview^^^
- miRNA-analysis: https://github.com/spawar2/miRNA-analysis [R: DESeq2, tidyverse], collaboration with Dr. Christain, University of Barcelona, Spain https://www.ub.edu/farmaco/en/pharmacognosy/research/neuropharmacology_in_aging_and_neurodegeneration/6/
Elsevier Data in Brief Paper^^^
- Traffic-Counter-ML: https://github.com/spawar2/Traffic-Counter-ML [Python: os, numpy, cv2, mrcnn.config, mrcnn.model, MaskRCNN, pathlib, twilio.rest, Client, kivy, App, Label, GridLayout, TextInput, Widget, BoxLayout, random]^^
- Calcium-Interactomes: https://github.com/spawar2/Calcium-Interactomes [R: CytoHubba, Cytoscape, String, GSEA], collaboration with Dr. Yang, Georgia State University, Atlanta, USA https://cas.gsu.edu/profile/jenny-j-yang/ Dr. Rakshya-Gorkhali https://www.researchgate.net/profile/Rakshya-Gorkhali
Nature Publishing Group NPG Scientific Reports Paper^^^ - Harr-Fisc-Transformations-Microarray: [*2013:4] [**16, 17, 18], collaboration with Dr. Rinehart, Western Kentucky University, Bowling Green, Kentucky, USA https://www.wku.edu/artp/webpages/bisc_dir.php
https://github.com/spawar2/Harr-Fisc-Transformations-Microarray [R] Poster BioMed Central BMC Bioinformatics Paper^^^^ - Linkedimm: https://github.com/spawar2/Linkedimm [Python: plotly, tidyverse, htmlwidgets, plotly, tidyverse, htmlwidgets], collaboration with Dr. Kleinstein, Yale University, New Haven, USA https://medicine.yale.edu/lab/kleinstein/ Dr. Kei cheung, https://medicine.yale.edu/profile/kei_cheung/?tab=bio
BioMed Central BMC Bioinformatics Paper^ -
2nd CMI-PB Prediction challenge: https://github.com/spawar2/2nd-CMI-PB-Prediction-challenge/tree/main^^
- HSET-Ovarian-Cancer-Biomarker: [*2017:1, 2016:1] [**12], collaboration with Dr. Aneja, Georgia State University, Atlanta, USA https://biomedical.gsu.edu/ritu/
https://github.com/spawar2/HSET-Ovarian-Cancer-Biomarker [R: BGmix] https://sites.gsu.edu/bgsa/ PosterBioMed Central BMC Journal of Ovarian Research Paper^^^
- Binary-Search-Tree-In-Java-Implementation: https://github.com/spawar2/Binary-Search-Tree-In-Java-Implementation [Java]^^
- Comparative-analysis-endemic-Coronaviruses: Taylor and Francis Libyan Journal of Medicine Paper https://github.com/spawar2/Comparative-analysis-endemic-Coronaviruses [R: ggplots], collaboration with Dr. Bagasra, Claflin University, Orangeburg, South Carolina, USA https://www.claflin.edu/academics-research/faculty-research/meet-our-faculty/omar-bagasra^^
-
Prostrate-Cancer-Biomarker-Analysis: https://github.com/spawar2/Prostrate-Cancer-Biomarker-Analysis. [R: edgeR, hgu133plus2.db, tidyverse, Affy] [https://www.linkedin.com/in/zion-ratchford-07514b1b9. This project in collaboration with **Zion Ratchford, Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). https://campuspress.yale.edu/shrikantpawar/files/2024/04/Zion-Presentation-80fd6d81d5b4f75b-rotated-e1712021318501-225×300.jpg https://www.linkedin.com/in/zion-ratchford-07514b1b9 https://campuspress.yale.edu/shrikantpawar/files/2024/01/Final-Prospectus-Edited-7e17c09b3e8c4813.pdf https://campuspress.yale.edu/shrikantpawar/files/2024/04/ROLE-CIRCULATION-BIOMARKERS-IN-PROSTATE-CANCER-DIAGNOSIS-4dbb44b57f793d6a.pptx]^^
- Internship: https://github.com/spawar2/INTERNSHIP [This project in collaboration with **Yash Singh, *Sai and Mohit, Georgia Tech, Atlanta, USA. Biomarker discovery in prostrate, lung and breast cancers (Spring 2024). https://github.com/yashsingh43 https://github.com/AbhayR43 https://github.com/Msai32005 https://github.com/rrchada https://github.com/arnavmadderla] [2024:**41] Poster^^
-
National Longitudinal Study of Adolescent to Adult Health analysis shows correlations between fast food consumption with physical and mental health of adults facing food insecurities Github [R: Tidyverse, ggplots]^^
-
Acid Ceramidase in colon cancer, with Dr. Harikumar, RGCB Github [R: Deseq2, ggplots]^^
-
Speech to text conversion using BytesIO: https://github.com/spawar2/Speech2Text [Python: BytesIO, b64decode, google.colab, IPython.display]^^
-
Diabetic Retinopathy Detection: https://github.com/spawar2/Diabetic-Retinopathy-Neural-Networks/tree/main
[Python: tensorflow, keras, layers, numpy, pandas, random, os, shutil, matplotlib.pyplot, imread, keras.preprocessing.image, ImageDataGenerator, categorical_accuracy, sklearn.model]^^
-
Atrial Fibrillation Detection: https://github.com/spawar2/Atrial-Fibrillation-Neural-Networks
[Python: numpy, pandas, seaborn, matplotlib.pyplot, sklearn.metrics, classification_report, sklearn.model_selection, f1_score, confusion_matrix, to_categorical, class_weight, OS, warnings]^^
-
Murmur-Neural-Network: https://github.com/spawar2/Murmur-Neural-Network
[Python: warnings, matplotlib, pylab inline, tensorflow, Keras, os, pandas, librosa, glob, matplotlib.pyplot]^^
-
Artificial Intelligence Based Framework for Predicting the Spread of Climate Change Related Infectious Diseases (Scired: Scientific Research & Development): https://github.com/spawar2/SCIRED-Analysis, collaboration with Dr. Desowky, Claflin University, Orangeburg, South Carolina, USA https://desoky.com/^^
-
Neural networks on CTA in peripheral arterial diseases (PAD): https://github.com/spawar2/CTA-PAD-Neural-Nets [Python: pytorch, tensorflow]
(National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR) NSF RII Track-1 award funded project Role: Co-PI, (direct, 100%)): https://scepscor.org/adapt-in-sc-thrust-2/. This project in collaboration with https://github.com/Caliese **Caliese J. Beckford, https://www.linkedin.com/in/caliese-beckford-25851821b/?originalSubdomain=jm (Graduate student), Undergraduate student: **Mr. Sabb, Dinari, (National Science Foundation South Carolina Established Program for Stem Cooperative Research (SC EPSCoR) NSF RII Track-1 award funded project Role: Co-PI, (direct, 100%)), Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). Machine learning application for biomedical device development. https://www.linkedin.com/in/dinari-sabb-0b62b51ba https://github.com/DinariSabb^^
-
Generative AI ChatBot using gpt-3.5-turbo engine: https://github.com/spawar2/Generative-AI-ChatBot-using-gpt-3.5-turbo-engine
[Python, HTML: numpy, pandas, pydicom, matplotlib.pyplot, math, cv2, tensorflow, keras, OPENAI, model: gpt-4-turbo]^^
-
Summer-Undergraduate-Research-Internship-2024: [R: edgeR, hgu133plus2.db, tidyverse, Affy] (4 students) https://github.com/spawar2/Summer-Undergraduate-Research-Internship-2024/tree/main This project in collaboration with **Felicia Forrester: https://www.linkedin.com/in/feliciaforrester, **Subash Neupane, https://github.com/CoolSubash https://np.linkedin.com/in/subash-neupane-aa07ba228?trk=public_profile_browsemap, **Amrinder Singh, **Ian, **Bimal https://www.linkedin.com/in/amrinder-singh-b74426251, Undergraduate student: Claflin University, Orangeburg, South Carolina, USA. (Fall 2023). Machine Learning applications in computer aided diagnosis (CAD) in hemorrhage, brain tumor, stroke, and cervical fractures. https://github.com/FelForr; https://github.com/AmrinderGlLL; https://github.com/bimalitani100; https://github.com/IanAAdams; https://github.com/jybvby^^
-
Hemoglobin and cancerous mole monitoring using near-infrared spectroscopy (NIRS), image analysis techniques, and machine learning: https://github.com/spawar2/NIRS-Machine-Learning. In collaboration with *Aryan Shrivastav, sophomore at Amity Regional High School in Woodbridge, Connecticut, USA. https://github.com/AryanS-0101^^
^^Claflin University, Orangeburg, South Carolina, USA
^^^Georgia State University, Atlanta, USA
^^^^Western Kentucky University, Bowling Green, Kentucky, USA