Tools and Data

MINA

For the analysis codes and analyzed data reported in Liu et al, Nature Communications 2020, please click here.

Reference: Miao Liu*, Yanfang Lu*, Bing Yang, Yanbo Chen, Jonathan S.D. Radda, Mengwei Hu, Samuel G. Katz & Siyuan Wang, Multiplexed imaging of nucleome architectures in single cells of mammalian tissue, Nature Communications, Volume 11, Number 2907, (2020). *Co-first authors. (Link). bioRXivdoi: https://doi.org/10.1101/2019.12.20.885277, (2019).  (Link)


ProbeDealer

For the ProbeDealer software package and demo examples, please click here.

Reference: Mengwei Hu*, Bing Yang*, Yubao Cheng, Jonathan S.D. Radda, Yanbo Chen, Miao Liu & Siyuan Wang, ProbeDealer is a convenient tool for designing probes for highly multiplexed fluorescence in situ hybridization, Scientific Reports, Volume 10, Number 22031, (2020). *Co-first authors. (Link).


MinaAnalyst

For the MinaAnalyst software package and demo examples, please click here.

Reference: Miao Liu, Bing Yang, Mengwei Hu, Jonathan S.D. Radda, Yanbo Chen, Shengyan Jin, Yubao Cheng & Siyuan Wang, Chromatin tracing and multiplexed imaging of nucleome architectures (MINA) and RNAs in single mammalian cells and tissue, Nature Protocols, (2021). https://doi.org/10.1038/s41596-021-00518-0 (Link).