*Indicates senior authorship and/or mentored student first author

+Indicates co-first authors

Refereed Journal Articles:

2024:

• Taylor-Salmon E, Hill V, Paul LM, Koch RT, Breban MI, Chaguza C, Sodeinde A, Warren JL, Bunch S, Cano N, Cone M, Eysoldt S, Garcia A, Gilles N, Hagy A, Heberlein L, Jaber R, Kassens E, Colarusso P, Davis A, Baudin S, Rico E, Mejia-Echeverri A, Scott B, Stanek D, Zimler R, Munoz-Jordan JL, Santiago GA, Adams LE, Paz-Bailey G, Spillane M, Katebi V, Paulino-Ramirez R, Mueses S, Peguero A, Sanchez N, Norman FF, Galan JC, Huits R, Hamer DH, Vogels CBF, Morrison A, Michael SF, and Grubaugh ND (2024). Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean. Nature Communications, In Press.
• Darrow LA, Huang M, Warren JL, Strickland MJ, Holmes HA, Newman AJ, and Chang HH (2024). Preterm and early-term delivery following heatwaves in 50 U.S. metropolitan areas. JAMA Network Open, In Press.
• Prunas O, Shioda K, Toscano CM, Valenzuela-Bravo MT, Tito JD, Warren JL, Weinberger DM, and de Oliveira LH (2024). Estimated population-level impact of pneumococcal conjugate vaccines against all-cause pneumonia mortality among unvaccinated age groups in five Latin American countries. The Journal of Infectious Diseases, In Press.
• Guo P, Warren JL, Deziel NC, and Liew Z (2024). Exposure range matters: considering non-linear associations in the meta-analysis of environmental pollutant exposure using examples of per- and polyfluoroalkyl substances and birth outcomes. American Journal of Epidemiology, In Press.
• Clark CJ, Warren JL, Saiers JE, Ma X, Bell ML, and Deziel NC (2024). Predictors of early life residential mobility in urban and rural Pennsylvania children with acute lymphoblastic leukemia and implications for environmental exposure assessment. Journal of Exposure Science and Environmental Epidemiology, In Press.
• *Tong G, Tong J, Jiang Y, Esserman D, Harhay MO, and Warren JL (2024). Hierarchical Bayesian modeling of heterogeneous outcome variance in cluster randomized trials. Clinical Trials, In Press.
• Zhang Y, Chang HH, Warren JL, and Ebelt ST (2024). A scalar-on-quantile-function approach for estimating short-term health effects of environmental exposures. Biometrics, 80(1):ujae008.
• *Lan Y, Crudu V, Ciobanu N, Codreanu A, Chitwood MH, Sobkowiak B, Warren JL, and Cohen T (2024). Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model. eBioMedicine, 102:105085.
• Warren JL, Wang Q, and Ciarleglio MM (2024). A scaled kernel density estimation prior for dynamic borrowing of historical information with application to clinical trial design. Statistics in Medicine, 43(8):1615-1626.
• Ansari N, Kabir F, Khan W, Khalid F, Malik AA, Warren JL, Mehmood U, Kazi AM, Yildirim I, Tanner W, Kalimuddin H, Kanwar S, Aziz F, Memon A, Alam MM, Ikram A, Meschke JS, Jehan F, Omer SB, and Nisar MI (2024). Environmental surveillance for COVID-19 using SARS-CoV-2 RNA concentration in wastewater – a study in District East, Karachi, Pakistan. The Lancet Regional Health – Southeast Asia, 20:100299.
• Warren JL, Sundaram M, Pitzer VE, Omer SB, and Weinberger DM (2024). Incorporating efficacy data from initial trials into subsequent evaluations: Application to vaccines against respiratory syncytial virus. Epidemiology, 35(2):130-136.
• Forman R, Okumu R, Mageid R, Baker A, Neu D, Parker R, Peyravi R, Schindler J, Sansing LH, de Havenon A, Jasne AS, Kernan WN, Narula R, Wira C, Warren JL, and Sharma R (2024). Association of neighborhood-level socioeconomic factors with delay to hospital arrival in patients with acute stroke. Neurology, 102:e207764.
• Prunas O, Willemsen JE, Bont L, Pitzer VE, Warren JL, and Weinberger DM (2024). Incorporating data from multiple endpoints in the analysis of clinical trials: Example from RSV vaccines. Epidemiology, 35(1):103-112.
• *Comess S, Chang HH, and Warren JL (2024). A Bayesian framework for incorporating exposure uncertainty into health analyses with application to air pollution and stillbirth. Biostatistics, 25(1):20-39.

2023:

• Warren JL, Chitwood MH, Sobkowiak B, Colijn C, and Cohen T (2023). Spatial modeling of M. tuberculosis transmission with dyadic genetic relatedness data. Biometrics, 79(4):3650-3663.
• Hao H, Yoo R, Strickland MJ, Darrow LA, D’Souza RR, Warren JL, Moss S, Wang H, Zhang H, and Chang HH (2023). Effects of air pollution on adverse birth outcomes and pregnancy complications in the U.S. state of Kansas (2000-2015). Scientific Reports, 13(1):21476.
• Siegel HG, Nason SL, Warren JL, Prunas O, Deziel NC, and Saiers JE (2023). Investigation of sources of fluorinated compounds in private water supplies in an oil and gas producing region of northern West Virginia. Environmental Science & Technology, 57:17452-17464.
• Krajewski A, Luben TJ, Warren JL, and Rappazzo KM (2023). Associations between weekly gestational exposure of fine particulate matter, ozone, and nitrogen dioxide and preterm birth in a North Carolina birth cohort, 2003-2015. Environmental Epidemiology, 7(6):e278.
• Havumaki J, Warren JL, Zelner J, Menzies NA, Calderon R, Contreras C, Lecca L, Becerra MC, Murray M, and Cohen T (2023). Spatially-targeted tuberculosis screening has limited impact beyond household contact tracing in Lima, Peru: A model-based analysis. PLoS One, 18(10):e0293519.
• Winters M, Christie S, Lepage C, Malik A, Bokemper S, Abeyesekera S, Boye B, Moini M, Jamil Z, Tariq T, Beresh T, Kazymyrova G, Palamar L, Paintsil E, Faller A, Seusan A, Bonnevie E, Smyser J, Khan K, Gulaid M, Francis S, Warren JL, Thomson A, and Omer SB (2023). Persuasive COVID-19 vaccination campaigns on Facebook and nationwide vaccination coverage in Ukraine, India, and Pakistan. PLoS Global Public Health, 3(9):e0002357.
• Zhuo H, Ritz B, Warren JL, Wu YW, and Liew Z (2023). Season of conception and risk of cerebral palsy. JAMA Network Open, 6(9):e2335164.
• da Silva K, Date K, Hirani N, LeBoa C, Jayaprasad N, Borhade P, Warren JL, Shimpi R, Hoffman S, Mikoleit M, Bhatnagar P, Cao Y, Haldar P, Harvey P, Zhang C, Daruwalla S, Dharmapalan D, Gavhane J, Joshi S, Rai R, Rathod V, Shetty K, Warrier D, Yadav S, Chakraborty D, Bahl S, Katkar A, Kunwar A, Yewale V, Dutta S, Luby S, and Andrews JR (2023). Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India. mBio, 14(4):e01179-23.
• Hill V, Koch RT, Bialosuknia SM, Ngo K, Zink SD, Koetzner CA, Maffei JG, Dupuis AP, Backenson PB, Oliver J, Bransfield AB, Misencik MJ, Petruff TA, Shepard JJ, Warren JL, Gill MS, Baele G, Vogels CBF, Gallagher G, Burns P, Hentoff A, Smole S, Brown C, Osborne M, Kramer LD, Armstrong PM, Ciota AT, and Grubaugh ND (2023). Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States. Current Biology, 33(12):2515-2527.e6.
• Martinez L+, Warren JL+, Harries AD, Croda J, Espinal M, López-Olarte RA, Avedillo P, Lienhardt C, Bhatia V, Liu Q, Chakaya J, Denholm J, Lin Y, Kawatsu L, Zhu L, Horsburgh CR, Cohen T, and Andrews JR (2023). Global, regional, and national estimates of tuberculosis incidence and case detection among incarcerated persons: A systematic analysis. The Lancet Public Health, 8(7):e511-e519.
• *Gonsalves GS, Paltiel AD, Thornhill T, DeMaria Jr. A, Cranston K, Klevens RM, and Warren JL (2023). Patterns of infectious disease associated with injection drug use in Massachusetts. Clinical Infectious Diseases, 76(12,15):2134-2139.
• Huang M, Strickland MJ, Richards M, Warren JL, Chang HH, and Darrow LA (2023). Confounding by conception seasonality in studies of temperature and preterm birth: A simulation study. Epidemiology, 34(3):439-449.
• Gunasekera K, Marcy O, Muñoz J, Lopez-Varela E, Sekadde MP, Franke MF, Bonnet M, Ahmed S, Amanullah F, Anwar A, Augusto O, Aurilio RB, Banu S, Batool I, Brands A, Cain KP, Carratalá-Castro L, Caws M, Click ES, Cranmer LM, García-Basteiro AL, Hesseling AC, Huynh J, Kabir S, Lecca L, Mandalakas A, Mavhunga F, Myint AA, Kyaw M, Nampijja D, Nicol MP, Orikiriza P, Palmer M, Sant’Anna CC, Siddiqui SA, Smith JP, Song R, Thuong NTT, Ung V, van der Zalm MM, Verkuijl S, Viney K, Walters EG, Warren JL, Zar HJ, Marais BJ, Graham SM, Debray TPA, Cohen T, and Seddon JA (2023). Development and validation of treatment-decision algorithms for children evaluated for pulmonary tuberculosis: An individual participant data meta-analysis. The Lancet Child & Adolescent Health, 7(5):336-346.
• Soriano Jr. MA, Warren JL, Clark CJ, Johnson NP, Siegel HG, Deziel NC, and Saiers JE (2023). Social vulnerability and groundwater vulnerability to contamination from unconventional hydrocarbon extraction in the Appalachian Basin. GeoHealth, 7(4):e2022GH000758.
• Tran PM, Warren JL, Leifheit EC, Goldstein LB, and Lichtman JH (2023). Associations between long-term air pollutant exposure and 30-day all-cause hospital readmissions in US stroke patients. Stroke, 54(4):e126-e129.
• Wang P, O’Donnell KJ, Warren JL, Dubrow R, and Chen K (2023). Temperature variability and birthweight: Epidemiological evidence from Africa. Environment International, 173(2023):107792.
• Tong H, Warren JL, Kang J, and Li M (2023). Using multi-sourced big data to correlate sleep deprivation and road traffic noise: A US county-level ecological study. Environmental Research, 220(2023):115029.
• Deziel NC, Warren JL, Bravo MA, Macalintal F, Kimbro RT, and Bell ML (2023). Assessing community-level exposure to social vulnerability and isolation: Spatial patterning and urban-rural differences. Journal of Exposure Science and Environmental Epidemiology, 33(2023):198-206.

2022:

• Zheng Z, Warren JL, Shapiro ED, Pitzer VE, and Weinberger DM (2022). Estimated incidence of respiratory hospitalizations attributable to RSV infections across age and socioeconomic groups. Pneumonia, 14:6.
• Chitwood MH, Russi M, Gunasekera KS, Havumaki J, Klaassen F, Pitzer VE, Salomon JA, Swartwood NA, Warren JL, Weinberger DM, Cohen T, and Menzies NA (2022). Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model. PLoS Computational Biology, 18(8):e1010465.
• Clark CJ, Johnson NP, Soriano Jr. MA, Warren JL, Sorrentino KM, Kadan-Lottick NS, Saiers JE, Ma X, and Deziel NC (2022). Unconventional oil and gas development exposure and risk of childhood acute lymphoblastic leukemia: A case-control study in Pennsylvania, 2009-2017. Environmental Health Perspectives, 130(8):1-12.
• Warren JL, Chang HH, Warren LK, Strickland MJ, Darrow LA, and Mulholland JA (2022). Critical window variable selection for mixtures: Estimating the impact of multiple air pollutants on stillbirth. Annals of Applied Statistics, 16(3):1633-1652.
• Richards M, Huang M, Strickland MJ, Newman AJ, Warren JL, D’Souza R, Chang HH, and Darrow LA (2022). Acute association between heatwaves and stillbirth in six US states. Environmental Health, 21(59):2022.
• You S, Chitwood MH, Gunasekera KS, Crudu V, Codreanu A, Ciobanu N, Furin J, Cohen T, Warren JL, and Yaesoubi R (2022). Predicting resistance to fluoroquinolones among patients with rifampicin-resistant tuberculosis using machine learning methods. PLoS Digital Health, 1(6):e0000059.
• Bravo MA, Warren JL, Leong MC, Deziel NC, Kimbro RT, Bell ML, and Miranda ML (2022). Where is air quality improving, and who benefits? A study of PM2.5 and ozone in North Carolina over 15 years. American Journal of Epidemiology, 191(7):1258-1269.
• Zheng Z, Warren JL, Artin I, Pitzer VE, and Weinberger DM (2022). Relative timing of respiratory syncytial virus epidemics in summer 2021 across the US was similar to a typical winter season. Influenza and Other Respiratory Viruses, 16(4):617-620.
• Chaguza C, Coppi A, Earnest R, Ferguson D, Kerantzas N, Warner F, Young HP, Breban MI, Billig K, Koch RT, Pham K, Kalinich CC, Ott IM, Fauver JR, Hahn AM, Tikhonova IR, Castaldi C, Kumar BD, Pettker CM, Warren JL, Weinberger DM, Landry ML, Peaper DR, Schulz W, Vogels CBF, and Grubaugh ND (2022). Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons. Med, 3(5):325-334.
• Zhuo H, Huang H, Sjodin A, Jin L, Ma S, Denic-Roberts H, Warren JL, Jones R, Davis M, Sun P, Yu H, Ward MH, Udelsman R, Zhang Y, and Rusiecki JA (2022). A nested case-control study of serum polychlorinated biphenyls and papillary thyroid cancer risk among U.S. military service members. Environmental Research, 212(2022):113367.
• Asare EO, Warren JL, and Pitzer VE (2022). Spatiotemporal patterns of diarrhea incidence in Ghana and the impact of meteorological and socio-demographic factors. Frontiers in Epidemiology, 2:871232.
• *Shen LL, Del Priore LV, and Warren JL (2022). A hierarchical Bayesian entry time realignment method to study the long-term natural history of diseases. Scientific Reports, 12(1):4869.
• Asabor EN, Warren JL, and Cohen T (2022). Racial/ethnic segregation and access to COVID-19 testing: Spatial distribution of COVID-19 testing sites in the four largest highly segregated cities in the United States. American Journal of Public Health, 112(3):518-526.
• Prunas O, Warren JL, Crawford FW, Gazit S, Patalon T, Weinberger DM, and Pitzer VE (2022). Vaccination with BNT162b2 reduces transmission of SARS-CoV-2 to household contacts in Israel. Science, 375(6585):1151-1154.
• *Song J and Warren JL (2022). A directionally-varying change points model for quantifying the impact of a point source. Journal of Agricultural, Biological and Environmental Statistics, 27(1):46-62.
• Yang C, Sobkowiak B, Naidu V, Codreanu A, Ciobanu N, Gunasekera KS, Chitwood MH, Alexandru S, Bivol S, Russi M, Havumaki J, Cudahy P, Fosburgh H, Allender CJ, Centner H, Engelthaler DM, Menzies NA, Warren JL, Crudu V, Colijn C, and Cohen T (2022). Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis. PLoS Medicine, 19(2):e1003933.
• Patalon T, Gazit S, Pitzer VE, Prunas O, Warren JL, and Weinberger DM (2022). Odds of testing positive for SARS-CoV-2 following receipt of 3 vs 2 doses of the BNT162b2 vaccine. JAMA Internal Medicine, 182(2):179-184.
• Clark CJ, Xiong B, Soriano Jr. MA, Gutchess K, Siegel HG, Ryan EC, Johnson NP, Cassell K, Elliott EG, Li Y, Cox AJ, Bugher N, Glist L, Brenneis RJ, Sorrentino KM, Plano J, Ma X, Warren JL, Plata DL, Saiers JE, and Deziel NC (2022). Assessing unconventional oil and gas exposure in the Appalachian Basin: Comparison of exposure surrogates and residential drinking water measurements. Environmental Science & Technology, 56(2):1091-1103.
• Warren JL, Cai J, Johnson NP, and Deziel NC (2022). A discrete kernel stick-breaking model for detecting spatial boundaries in hydraulic fracturing wastewater disposal well placement across Ohio. Journal of the Royal Statistical Society: Series C, 71(1):175-193.
• Sy M, Deme AB, Warren JL, Early A, Schaffner S, Daniels RF, Dieye B, Ndiaye IM, Diedhiou Y, Mbaye AM, Volkman SK, Hartl D, Wirth DF, Ndiaye D, and Bei AK (2022). Plasmodium falciparum genomic surveillance reveals spatial and temporal trends, association of genetic and physical distance, and household clustering. Scientific Reports, 12(1):938.
• Becher RD, Jin L, Warren JL, Gill TM, DeWane MP, Davis KA, and Zhang Y (2022). Geographic variation in the utilization of and mortality after emergency general surgery operations in the Northeastern and Southeastern United States. Annals of Surgery, 275(2):340-347.
• Crawford FW, Jones SA, Cartter M, Dean SG, Warren JL, Li ZR, Barbieri J, Campbell J, Kenney P, Valleau T, and Morozova O (2022). Impact of close interpersonal contact on COVID-19 incidence: Evidence from one year of mobile device data. Science Advances, 8(1):eabi5499. (Winner of the Innovative Tradecraft Competition at the US Geospatial Intelligence Foundation 2021 meeting)

2021:

• Phillips MT, Meiring JE, Voysey M, Warren JL, Baker S, Basnyat B, Clemens JD, Dolecek C, Dunstan SJ, Dougan G, Gordon MA, Thindwa D, Heyderman RS, Holt KE, Qadri F, Pollard AJ, Pitzer VE, and the STRATAA Study Group (2021). A Bayesian approach for estimating typhoid fever incidence from large-scale facility-based passive surveillance data. Statistics in Medicine, 40(26):5853-5870.
• Phung D, Warren JL, Chu C, and Dubrow R (2021). The relationship between flood severity and risk of hospitalization in the Mekong River Delta of Vietnam. Occupational and Environmental Medicine, 78(9):676-678.
• Gunasekera KS, Walters E, van der Zalm MM, Palmer M, Warren JL, Hesseling AC, Cohen T, and Seddon JA (2021). Development of a treatment-decision algorithm for human immunodeficiency virus-uninfected children evaluated for pulmonary tuberculosis. Clinical Infectious Diseases, 73(4):e904-e912.
• Pitzer VE, Chitwood ME, Havumaki J, Menzies NA, Perniciaro S, Warren JL, Weinberger DM, and Cohen T (2021). The impact of changes in diagnostic testing practices on estimates of COVID-19 transmission in the United States. American Journal of Epidemiology, 190(9):1908-1917.
• de Oliveira LH, Shioda K, Valenzuela MT, Janusz CB, Rearte A, Sbarra AN, Warren JL, Toscano CM, and Weinberger DM (2021). Declines in pneumonia mortality following the introduction of pneumococcal conjugate vaccines in Latin American and Caribbean countries. Clinical Infectious Diseases, 73(2):306-313.
• *Ehrlich HY, Bei AK, Weinberger DM, Warren JL, and Parikh S (2021). Mapping partner drug resistance to guide antimalarial combination therapy policies in sub-Saharan Africa. Proceedings of the National Academy of Sciences, 118(29):e2100685118.
• Heo S, Chen C, Kim H, Sabath B, Dominici F, Warren JL, Di Q, Schwartz J, and Bell ML (2021). Temporal changes in associations between high temperature and hospitalizations by greenspace: Analysis in the Medicare population in 40 U.S. northeast counties. Environment International, 156(2021):106737.
• Zheng Z, Pitzer VE, Warren JL, and Weinberger DM (2021). Community factors associated with local epidemic timing of respiratory syncytial virus: A spatiotemporal modeling study. Science Advances, 7(26):eabd6421.
• Jiang S, Warren JL, Scovronick N, Moss SE, Darrow LA, Strickland MJ, Newman AJ, Chen Y, Ebelt ST, Chang HH (2021). Using logic regression to characterize extreme heat exposures and their health associations: A time-series study of emergency department visits in Atlanta. BMC Medical Research Methodology, 21(1):87.
• *Gonsalves GS, Copple JT, Paltiel AD, Fenichel EP, Bayham J, Abraham M, Kline D, Malloy S, Rayo MF, Zhang N, Faulkner D, Morey DA, Wu F, Thornhill T, Iloglu S, and Warren JL (2021). Maximizing the efficiency of active case-finding for SARS-CoV-2 using bandit algorithms. Medical Decision Making, 2021:353-362.
• *Gonsalves GS, Paltiel AD, Thornhill T, Iloglu S, DeMaria Jr. A, Cranston K, Klevens RM, Walensky RP, and Warren JL (2021). The dynamics of infectious diseases associated with injection drug use in Lawrence and Lowell, Massachusetts. Open Forum Infectious Diseases, 8(6):ofab128.
• Wyllie AL, Warren JL, Regev-Yochay G, Givon-Lavi N, Dagan R, Weinberger DM (2021). Serotype patterns of pneumococcal disease in adults are correlated with carriage patterns in older children. Clinical Infectious Diseases, 17(11):768-775.
• Thomas N, Ebelt ST, Newman AJ, Scovronick N, D’Souza RR, Moss SE, Warren JL, Strickland MJ, Darrow LA, and Chang HH (2021). Time-series analysis of daily ambient temperature and emergency department visits in five US cities with a comparison of exposure metrics derived from 1-km meteorology products. Environmental Health, 20(55):2021.
• Cords O, Martinez L, Warren JL, O’Marr JM, Walter KS, Cohen T, Zheng J, Ko AI, Croda J, and Andrews JR (2021). Incidence and prevalence of tuberculosis in incarcerated populations: A systematic review and meta-analysis. The Lancet Public Health, 6(5):e300-e308.
• Nori-Sarma A, Thimmulappa R, Venkataraman GV, Warren JL, Berman JD, Whittaker SD, Kulick ER, Wellenius GA, Mahesh PA, and Bell ML (2021). NO2 exposure and lung function decline in a cohort of adults in Mysore, India. Environmental Research Communications, 3:055001.
• Huang M, Strickland MJ, Richards M, Holmes HA, Newman AJ, Garn JV, Liu Y, Warren JL, Chang HH, and Darrow LA (2021). Acute associations between heatwaves and preterm and early-term birth in 50 US metropolitan areas: A matched case-control study. Environmental Health, 20(47):2021.
• Clark CJ, Warren JL, Kadan-Lottick N, Ma X, Bell MB, Saiers JE, and Deziel NC (2021). Community concern and government response: Identifying socio-economic and demographic predictors of oil and gas complaints and drinking water impairments in Pennsylvania. Energy Research & Social Science, 76:102064.
• *Shioda K, Cai J, Warren JL, and Weinberger DM (2021). Incorporating information on control diseases across space and time to improve estimation of the population-level impact of vaccines. Epidemiology, 32(3):360-367.
• Warren JL, Miranda ML, Tootoo JL, Osgood CE, and Bell ML (2021). Spatial distributed lag data fusion for estimating ambient air pollution. Annals of Applied Statistics, 15(1):323-342.
• Lee JH, Ma AK, Warren JL, and Teng CC (2021). Impact of iStent micro-bypass shunt on Medicare Part B glaucoma surgical expenditure. Ophthalmology Glaucoma, 4(2):131-138.
• Sharma R, Kuohn LR, Weinberger DM, Warren JL, Sansing LH, Jasne A, Falcone G, Dhand A, and Sheth KN (2021). Excess cerebrovascular mortality in the United States during the COVID-19 pandemic. Stroke, 52(2):563-572.
• Deziel NC, Warren JL, Huang H, Zhou H, Sjodin A, and Zhang Y (2021). Exposure to polychlorinated biphenyls and organochlorine pesticides and thyroid cancer in Connecticut women. Environmental Research, 192(2021):110333.
• Wang Q, Miao H, Warren JL, Ren M, Benmarhnia T, Knibbs LD, Zhang H, Zhao Q, and Huang C (2021). Association of maternal ozone exposure with term low birth weight and susceptible window identification. Environment International, 146(2021):106208.

2020:

• Shioda K, Toscano CM, Valenzuela MT, Huarcaya WV, Warren JL, Weinberger DW, and de Oliveira LH (2020). Impact of pneumococcal conjugate vaccine uptake on childhood pneumonia mortality across income levels in Brazil, Colombia, and Peru. Gates Open Research, 4:136.
• *Zhang Z, Chandra S, Kayser A, Hsu M, and Warren JL (2020). A hierarchical Bayesian implementation of the Experience-Weighted Attraction model. Computational Psychiatry, 4:40-60.
• Reich BJ, Guan Y, Fourches D, Warren JL, Sarnat SE, and Chang HH (2020). Integrative statistical methods for exposure mixtures and health. Annals of Applied Statistics, 14(4):1945-1963.
• Phillips MT, Warren JL, Givon-Lavi N, Tothpal A, Regev-Yochay G, Dagan R, and Weinberger DM (2020). Evaluating post-vaccine expansion patterns of pneumococcal serotypes. Vaccine, 38(49):7756-7763.
• Weinberger DM and Warren JL (2020). Estimating the power to detect a change caused by a vaccine from time series data. Gates Open Research, 4:27.
• Warren JL, Kong W, Luben TJ, and Chang HH (2020). Critical window variable selection: Estimating the impact of air pollution on very preterm birth. Biostatistics, 21(4):790-806.
• Wyllie AL, Fournier J, Casanovas-Massana A, Campbell M, Tokuyama M, Vijayakumar P, Warren JL, Geng B, Muenker MC, Moore AJ, Vogels CBF, Petrone ME, Ott IM, Lu P, Venkataraman A, Lu-Culligan A, Klein J, Earnest R, Simonov M, Datta R, Handoko R, Naushad N, Sewanan LR, Valdez J, White EB, Lapidus S, Kalinich CC, Jiang X, Kim DJ, Kudo E, Linehan M, Mao T, Moriyama M, Oh JE, Park A, Silva J, Song E, Takahashi T, Taura M, Weizman O, Wong P, Yang Y, Bermejo S, Odio CD, Omer, SB, Dela Cruz CS, Farhadian S, Martinello RA, Iwasaki A, Grubaugh ND, and Ko AI (2020). Saliva or nasopharyngeal swab specimens for detection of SARS-CoV-2. New England Journal of Medicine, 383:1283-1286.
• Peccia J, Zulli A, Brackney DE, Grubaugh ND, Kaplan EH, Casanovas-Massana A, Ko AI, Malik AA, Wang D, Wang M, Warren JL, Weinberger DM, Arnold W, and Omer SB (2020). Measurement of SARS-CoV-2 RNA in wastewater tracks community infection dynamics. Nature Biotechnology, 38:1164-1167.
• Wang Y, Wang K, Han T, Zhang P, Chen X, Wu W, Feng Y, Yang H, Li M, Xie B, Guo P, Warren JL, Shi X, Wang S, Zhang Y (2020). Exposure to multiple metals and prevalence for preeclampsia in Taiyuan, China. Environment International, 145(2020):106098.
• *Gunasekera KS, Zelner J, Becerra MC, Contreras C, Franke MF, Lecca L, Murray MB, Warren JL, and Cohen T (2020). Children as sentinels of tuberculosis transmission: Disease mapping of programmatic data. BMC Medicine, 18(234):1-7.
• Ma AK, Lee JH, Warren JL, and Teng CC (2020). GlaucoMap – distribution of glaucoma surgical procedures in the United States. Clinical Ophthalmology, 2020(14):2551-2560.
• Warren JL (2020). A nonstationary spatial covariance model for processes driven by point sources. Journal of Agricultural, Biological and Environmental Statistics, 25(3):415-430.
• Yim CK, Teng CC, Warren JL, Tsai JC, and Chadha N (2020). Microinvasive glaucoma surgical training in United States ophthalmology residency programs. Clinical Ophthalmology, 2020(14):1785-1789.
• Warren JL, Luben TJ, and Chang HH (2020). A spatially-varying distributed lag model with application to air pollution and term low birth weight study. Journal of the Royal Statistical Society: Series C, 69(3):681-696.
• Nori-Sarma A, Thimulappa RK, Venkataramana GV, Fauzie AK, Dey SK, Venkareddy LK, Berman JD, Lane KJ, Fong KC, Warren JL, and Bell ML (2020). Low-cost NO2 monitoring and predictions of urban exposure using universal kriging and land-use regression modelling in Mysore, India. Atmospheric Environment, 226(2020):117395.
• Warren JL and Weinberger DM (2020). Estimating serotype-specific efficacy of pneumococcal conjugate vaccines using hierarchical models. Epidemiology, 31(2):259-262.
• Johnson NP, Warren JL, Elliott EG, Niccolai LM, and Deziel NC (2020). A multi-region analysis of shale drilling activity and rates of sexually transmitted infections in the United States. Sexually Transmitted Diseases, 47(4):254-260.
• Armstrong PM, Ehrlich HY, Magalhaes T, Miller MR, Conway PJ, Bransfield A, Misencik MJ, Gloria-Soria A, Warren JL, Andreadis TG, Shepard JJ, Foy BD, Pitzer VE, and Brackney DE (2020). Successive blood meals enhance virus dissemination within mosquitoes and increase transmission potential. Nature Microbiology, 5:239-247.
• *Ransome Y, Subramanian SV, Duncan DT, Vlahov D, and Warren JL (2020). Multivariate spatiotemporal modeling of drug- and alcohol-poisoning deaths in New York City, 2009-2014. Spatial and Spatio-temporal Epidemiology, 32(2020):100306.

2019:

• Li ZR, Xie E, Crawford FW, Warren JL, McConnell K, Copple JT, Johnson T, and Gonsalves GS (2019). Suspected heroin-related overdose incidents in Cincinnati, Ohio: A spatiotemporal analysis. PLoS Medicine, 16(11):e1002956.
• Deziel NC, Alfonso-Garrido J, Warren JL, Huang H, Sjodin A, and Zhang Y (2019). Exposure to polybrominated diphenyl ethers and a polybrominated biphenyl and risk of thyroid cancer in women: Single and multi-pollutant approaches. Cancer Epidemiology, Biomarkers & Prevention, 28(10):1755-1764.
• Liu Y, Warren JL, and Zhao H (2019). A hierarchical Bayesian model for single-cell clustering using RNA-sequencing data. Annals of Applied Statistics, 13(3):1733-1752.
• Anway MY, Warren JL, and Pitzer VE (2019). Diarrhea patterns and climate: A spatiotemporal analysis of diarrheal disease in Afghanistan. American Journal of Tropical Medicine & Hygiene, 101(3):525-533.
• *Berchuck SI, Mwanza JC, and Warren JL (2019). Diagnosing glaucoma progression with visual field data using a spatiotemporal boundary detection method. Journal of the American Statistical Association, 114(527):1063-1074.
• Wang Y, Zhang P, Chen Xi, Wu W, Feng Y, Yang H, Li M, Xie B, Guo P, Warren JL, Shi X, Wang S, and Zhang Y (2019). Multiple metal concentrations and gestational diabetes mellitus in Taiyuan, China. Chemosphere, 237(2019):124412.
• Jin L, Berman JD, Warren JL, Levy JI, Thurston G, Zhang Y, Xu X, Wang S, Zhang Y, and Bell ML (2019). A land use regression model of nitrogen dioxide and fine particulate matter in a complex urban core in Lanzhou, China. Environmental Research, 177(2019):108597.
• Strickland MJ, Lin Y, Darrow LA, Warren JL, Mulholland JA, and Chang HH (2019). Associations between ambient air pollutant concentrations and birth weight: A quantile regression analysis. Epidemiology, 30(5):624-632.
• *Mehra R, Kershaw T, Ickovics J, Keene DE, and Warren JL (2019). Racial and ethnic disparities in adverse birth outcomes: Differences by racial residential segregation. SSM – Population Health, 8(2019):100417.
• Zeng L, Warren JL, and Zhao H (2019). Phylogeny-based tumor subclone identification using a Bayesian feature allocation model. Annals of Applied Statistics, 13(2):1212-1241.
• Weinberger DM, Warren JL, Dalby T, Shapiro ED, Valentiner-Branth P, Slotved HC, and Harboe ZB (2019). Differences in the impact of pneumococcal serotype replacement in individuals with and without underlying medical conditions. Clinical Infectious Diseases, 69(1):100-106.
• Rappazzo KM, Warren JL, Davalos AD, Meyer RE, Sanders AP, Brownstein NC, and Luben TJ (2019). Maternal residential exposure to specific agricultural pesticide active ingredients and birth defects in a 2003-2005 North Carolina birth cohort. Birth Defects Research, 111(6):312-323.
• *Berchuck SI, Mwanza JC, Tanna AP, Budenz DL, and Warren JL (2019). Improved detection of visual field progression using a spatiotemporal boundary detection method. Scientific Reports, 9(1):4642.
• *Berchuck SI, Mwanza JC, and Warren JL (2019). A spatially varying change points model for monitoring glaucoma progression using visual field data. Spatial Statistics, 30(2019):1-26. (Winner of RAB Poster Competition Award, ENAR 2018)
• Chadha N, Warren JL, Liu J, Tsai JC, and Teng CC (2019). Seven- and eight-year trends in resident and fellow glaucoma surgical experience. Clinical Ophthalmology, 2019(13):303-309.
• Regan AK, Ball SJ, Warren JL, Malacova E, Padula A, Marston C, Nassar N, Stanley F, Leonard H, de Klerk N, and Pereira G (2019). A population-based matched sibling analysis estimating the association between first interpregnancy interval and birth outcomes. American Journal of Epidemiology, 188(1):9-16.
• Shioda K, Schuck-Paim C, Taylor RJ, Lustig R, Simonsen L, Warren JL, and Weinberger DM (2019). Challenges in estimating the impact of vaccination with sparse data. Epidemiology, 30(1):61-68.

2018:

• Nealy BE, Warren JL, Strickland MJ, Darrow LA, and Chang HH (2018). Impacts of gestational age uncertainty in estimating associations between preterm birth and ambient air pollution. Environmental Epidemiology, 2(4):e031.
• Cudahy PGT, Warren JL, Cohen T, and Wilson D (2018). Trends in CRP, D-dimer and fibrinogen during therapy for HIV associated multidrug resistant tuberculosis. American Journal of Tropical Medicine & Hygiene, 99(5):1336-1341.
• *Gonsalves GS, Copple JT, Johnson JT, Paltiel AD, and Warren JL (2018). Bayesian adaptive algorithms for locating HIV mobile testing services. BMC Medicine, 16(155):1-13.
• Silva GS, Warren JL, and Deziel NC (2018). Spatial modeling to identify sociodemographic predictors of hydraulic fracturing wastewater injection wells in Ohio census block groups. Environmental Health Perspectives, 126(6):1-8.
• Elliott EG, Ma X, Leaderer BP, McKay LA, Pedersen CJ, Wang C, Gerber CJ, Wright TJ, Sumner AJ, Brennan M, Silva G, Warren JL, Plata DL, and Deziel NC (2018). A community-based evaluation of proximity to unconventional oil and gas wells, drinking water contaminants, and health symptoms in Ohio. Environmental Research, 167(2018):550-557.
• Warren JL, Grandjean L, Moore DAJ, Lithgow A, Coronel J, Sheen P, Zelner JL, Andrews JR, and Cohen T (2018). Investigating spillover of multidrug-resistant tuberculosis from a prison: A spatial and molecular epidemiological analysis. BMC Medicine, 16(122):1-9.
• Hussnain SA, Kovacs KD, Warren JL, and Teng CC (2018). Corneal hysteresis and anterior segment optical coherence tomography anatomical parameters in primary angle closure suspects. Clinical and Experimental Ophthalmology, 46(5):468-472.
• Yang C, Lu L, Warren JL, Wu J, Jiang Q, Zuo T, Gan M, Liu M, Liu Q, DeRiemer K, Hong J, Shen X, Colijn C, Guo X, Gao Q, and Cohen T (2018). Internal migration and the transmission dynamics of tuberculosis in Shanghai, China: A prospective epidemiological, spatial, and genomic analysis. The Lancet Infectious Diseases, 18(7):788-795.
• Warren JL and Gordon-Larsen P (2018). Factors associated with supermarket and convenience store closure: A discrete-time spatial survival modeling approach. Journal of the Royal Statistical Society: Series A, 181(3):783-802.
• Warren JL, Son J, Pereira G, Leaderer BP, and Bell ML (2018). Investigating the impact of maternal residential mobility on identifying critical windows of susceptibility to ambient air pollution during pregnancy. American Journal of Epidemiology, 187(5):992–1000. (Editor’s Choice)
• Mwanza JC, Warren JL, and Budenz DL (2018). Utility of combining spectral domain optical coherence tomography structural parameters for the diagnosis of early glaucoma: A mini-review. Eye and Vision, 5(9).
• Mwanza JC, Lee G, Budenz DL, Warren JL, Wall M, Artes PH, Callan T, and Flanagan JG (2018). Validation of the UNC OCT Index for the Diagnosis of Early Glaucoma. Translational Vision Science & Technology, 7(2):16.
• Deziel NC, Humeau Z, Elliott EG, Warren JL, and Niccolai LC (2018). Shale gas activity and increased rates of sexually transmitted infections in Ohio, 2000-2016. PLoS One, 13(3):e0194203.
• Cassell K, Gacek P, Warren JL, Raymond PA, Cartter M, and Weinberger DM (2018). Association between sporadic legionellosis and river systems in Connecticut. The Journal of Infectious Diseases, 217(2):179-187. (Editor’s Choice)
• Benz L, Wrensch MR, Schildkraut JM, Bondy ML, Warren JL, Wiemels JL, and Claus EB (2018). Quality of life after surgery for intracranial meningioma. Cancer, 124(1):161-166.

2017:

• Kürüm E, Warren JL, Schuck-Paim C, Lustig R, Lewnard J, Fernandes RM, Fuentes R, Bruhn CAW, Taylor RJ, Simonsen L, and Weinberger DM (2017). Bayesian model averaging with change points to assess the impact of vaccination and public health interventions. Epidemiology, 28(6):889-897. (Winner of 2018 Kenneth Rothman Epidemiology Prize Paper Award)
• Warren JL, Shioda K, Kürüm E, Schuck-Paim C, Lustig R, Taylor RJ, Simonsen L, and Weinberger DM (2017). Impact of pneumococcal conjugate vaccines against pneumonia hospitalizations in high- and low-income sub-populations in Brazil. Clinical Infectious Diseases, 65(11):1813-1818.
• *Sun J, Herazo-Maya JD, Kaminski N, Zhao H, and Warren JL (2017). A Dirichlet process mixture model for clustering longitudinal gene expression data. Statistics in Medicine, 36(22):3495-3506.
• Sun J, Warren JL, and Zhao H (2017). A Bayesian semiparametric factor analysis model for subtype identification. Statistical Applications in Genetics and Molecular Biology, 16(2):145-158.
• Antillon M, Warren JL, Crawford FW, Weinberger DM, Kurum E, Pak GD, Marks F, and Pitzer VE (2017). The burden of typhoid fever in low- and middle-income countries: A meta-regression approach. PLoS Neglected Tropical Diseases, 11(2):e0005376.
• Bruhn CA, Hetterich S, Schuck-Paim C, Kürüm E, Taylor RJ, Lustig R, Shapiro ED, Warren JL, Simonsen L, and Weinberger DM (2017). Estimating the population-level impact of vaccines using synthetic controls. Proceedings of the National Academy of Sciences, 114(7):1524-1529.
• Warren JL, Pingali SC, and Weinberger DM (2017). Spatial variability in the persistence of pneumococcal conjugate vaccine-targeted pneumococcal serotypes among adults. Epidemiology, 28(1):119-126.

2016:

• Noveroske DB, Warren JL, Pitzer VE, and Weinberger DM (2016). Local variations in the timing of RSV epidemics. BMC Infectious Diseases, 16(1):674.
• Warren JL, Mwanza JC, Tanna AP, and Budenz DL (2016). A statistical model to analyze clinician expert consensus on glaucoma progression using spatially correlated visual field data. Translational Vision Science & Technology, 5(4):14.
• Warren JL, Perez-Heydrich C, Burgert CR, and Emch ME (2016). Influence of Demographic and Health Survey point displacements on distance-based analyses. Spatial Demography, 4(2):155-173.
• Perez-Heydrich C, Warren JL, Burgert CR, and Emch ME (2016). Influence of Demographic and Health Survey point displacements on raster-based analyses. Spatial Demography, 4(2):135-153.
• Warren JL, Perez-Heydrich C, Burgert CR, and Emch ME (2016). Influence of Demographic and Health Survey point displacements on point-in-polygon analyses. Spatial Demography, 4(2):117-133.
• Weinberger DM, Grant LR, Weatherholtz RC, Warren JL, O’Brien KL, and Hammitt LL (2016). Relating pneumococcal carriage among children with disease rates among adults before and after introduction of conjugate vaccines. American Journal of Epidemiology, 183(11):1055-1062.
• Warren JL, Stingone JA, Herring AH, Luben TJ, Fuentes M, Aylsworth AS, Langlois PH, Botto L, Correa A, Olshan AF, and the National Birth Defects Prevention Study (2016). Bayesian multinomial probit modeling of daily windows of susceptibility for maternal PM2.5 exposure and congenital heart defects. Statistics in Medicine, 35(16):2786-2801.
• Rappazzo KM, Warren JL, Meyer RE, Herring AH, Sanders AP, Brownstein NC, and Luben TJ (2016). Maternal residential exposure to agricultural pesticides and birth defects in a 2003-2005 North Carolina birth cohort. Birth Defects Research Part A: Clinical and Molecular Teratology, 106(4):240-249.
• Pingali SC, Warren JL, Mead AM, Sharova N, Petit S, and Weinberger DM (2016). Association between local pediatric vaccination rates and patterns of pneumococcal disease in adults. The Journal of Infectious Diseases, 213(4):509-515.
• *Berchuck SI, Warren JL, Herring AH, Evenson KR, Moore KAB, Kesavan YK, and Diez-Roux AV (2016). Spatially modelling the association between access to recreational facilities and exercise: The `Multi-ethnic study of atherosclerosis’. Journal of the Royal Statistical Society: Series A, 179(1):293-310.

2015:

• Mwanza JC, Kim H, Budenz DL, Warren JL, Lawrence SD, Jani PD, Thompson GS, and Lee RK (2015). Residual and dynamic range of retinal nerve fiber layer thickness in glaucoma: Comparison of three OCT platforms. Investigative Ophthalmology & Visual Science, 56(11):6344-6351.
• *Nethery RC, Warren JL, Herring AH, Moore KAB, and Diez-Roux AV (2015). A common spatial factor analysis model for measured neighborhood-level characteristics: The multi-ethnic study of atherosclerosis. Health and Place, 36:35-46.
• Weinberger DM, Warren JL, Steiner CA, Charu V, Viboud C, and Pitzer VE (2015). Reduced-dose schedule of prophylaxis based on local data provides near-optimal protection against RSV. Clinical Infectious Diseases, 61(4):506-514.
• Chang HH, Warren JL, Darrow LA, Reich BJ, and Waller LA (2015). Assessment of critical exposure and outcome windows in time-to-event analysis with application to air pollution and preterm birth study. Biostatistics, 16(3):509-521.
• Lamichhane AP, Warren JL, Peterson M, Rummo P, and Gordon-Larsen P (2015). Spatial-temporal modeling of neighborhood sociodemographic characteristics and food stores. American Journal of Epidemiology, 181(2):137-150.
• Mwanza JC, Budenz DL, Warren JL, Webel AD, Reynolds CE, Barbosa DT, and Lin S (2015). Retinal nerve fiber layer thickness floor and corresponding functional loss in glaucoma. British Journal of Ophthalmology, 99(6):732-737.
• Mwanza JC, Warren JL, Hochberg JT, Budenz DL, Chang RT, and Ramulu PY (2015). Combining frequency doubling technology perimetry and scanning laser polarimetry for glaucoma detection. Journal of Glaucoma, 24(8):561-567.

2014:

• Sanders AP, Desrosiers TA, Warren JL, Herring AH, Enright D, Olshan AE, Meyer RE, and Fry RC (2014). Association between arsenic, cadmium, manganese, and lead levels in private wells and birth defects prevalence in North Carolina: An ecologic study. BMC Public Health, 14(1):955.
• Warren JL, Luben TJ, Sanders AP, Brownstein NC, Herring AH, and Meyer RE (2014). An evaluation of metrics for assessing maternal exposure to agricultural pesticides. Journal of Exposure Science and Environmental Epidemiology, 24(5):497-503.

2013:

• Mwanza JC, Warren JL, Budenz DL, and the Ganglion Cell Analysis Study Group (2013). Combining spectral domain optical coherence tomography structural parameters for the diagnosis of glaucoma with early visual field loss. Investigative Ophthalmology & Visual Science, 54(13):8393-8400.
• Lamichhane AP, Warren JL, Puett R, Porter DE, Bottai M, Mayer-Davis EJ, and Liese AD (2013). Spatial patterning of supermarkets and fast food outlets with respect to neighborhood characteristics. Health and Place, 23:157-164.
• Warren JL, Perez-Heydrich C, and Yunus M (2013). Bayesian spatial design of optimal deep tubewell locations in Matlab, Bangladesh. Environmetrics, 24(6):377-386.
• Meng Q, Richmond-Bryant J, Lu S, Buckley B, Welsh WJ, Whitsel EA, Hanna A, Yeatts KB, Warren JL, Herring AH, and Xiu A (2013). Cardiovascular outcomes and the physical and chemical properties of metal ions found in particulate matter air pollution: A QICAR study. Environmental Health Perspectives, 121(5):558-564.
• Warren JL, Fuentes M, Herring AH, and Langlois PH (2013). Air pollution metric analysis while determining susceptible periods of pregnancy for low birth weight. ISRN Obstetrics and Gynecology, 2013:387452.

2012:

• Warren JL, Fuentes M, Herring AH, and Langlois PH (2012). Bayesian spatial-temporal model for cardiac congenital anomalies and ambient air pollution risk assessment. Environmetrics, 23(8):673-684.
• Warren JL, Fuentes M, Herring AH, and Langlois PH (2012). Spatial-temporal modeling of the association between air pollution exposure and preterm birth: Identifying critical windows of exposure. Biometrics, 68(4):1157-1167. (Winner of 2012 Best Paper in Biometrics Award)

Book Chapters:

• Warren JL and Bell ML. Alternative models for estimating air pollution exposures – land use regression and stochastic human exposure and dose simulation for particulate matter (SHEDS-PM), in Handbook of Environmental and Ecological Statistics (editors: Gelfand A, Smith R, Hoeting J, and Fuentes M), CRC Press, 2019.
• Warren JL, Fuentes M, Herring AH, and Langlois PH. Spatiotemporal modeling of preterm birth, in Handbook of Spatial Epidemiology (editors: Lawson AB, Banerjee S, Haining RP, and Ugarte L), CRC Press, 2016.

Patent:

• Mwanza JC, Budenz DL, and Warren JL (2017). Methods, systems, and computer readable media for predicting early onset glaucoma. US Patent Number: 9,554,755; January 31st, 2017.

Journal Correspondence:

• Cassell K, Gacek P, and Warren JL, Raymond PA, Cartter M, Weinberger DM (2018). Reply to Rucinski et. al. Letter. The Journal of Infectious Diseases, 218(4):670-671.
• Regan AK, Ball SJ, Warren JL, Malacova E, Padula A, Marston C, Nassar N, Stanley F, Leonard H, de Klerk N, and Pereira G (2019). The uncertain role of interpregnancy interval and why we need new approaches to an old problem. American Journal of Epidemiology, 188(1):22-23.

Internal Publications:

• Perez-Heydrich C, Warren JL, Burgert CR, and Emch ME (2013). Guidelines on the use of DHS GPS data. Spatial Analysis Reports No. 8. Calverton, Maryland, USA: ICF International.

Blog Posts:

• *Berchuck SI and Warren JL (2018). Statistics in glaucoma: Part I. R Views.
• *Berchuck SI and Warren JL (2018). Statistics in glaucoma: Part II. R Views.
• *Berchuck SI and Warren JL (2018). Statistics in glaucoma: Part III. R Views.