Software

Patch Tracking Tools

ImageJ plugins and macros for patch tracking and quality control for quantitative fluorescence microscopy.

Download the latest version of PatchTrackingTools (version 2015.12.16) with a documentation
(or clone the Bitbucket repository)

Download a sample movie and its analysis with PatchTrackingTools (~60 Mo)

If you have any issues or find glitches please contact Julien Berro (julien.berro@yale.edu)

Please cite: Berro J and Pollard TD. Local and global analysis of endocytic patch dynamics in fission yeast. Molecular Biology of the Cell. 2014 Nov 5;25(22):3501-14. PMID: 25143395

Older versions: PatchTrackingTools.2015.12.08.zip, PatchTrackingTools.2015.06.01.zip, PatchTrackingTools.2014.05.25.zip

Patch data post-processing tools

Matlab scripts to postprocess the data obtained with the PatchTrackingTools, including temporal super-resolution alignment (Berro and Pollard, 2014)  and plotting functionalities.

PatchTrackingDataPostprocessing.160311.paper (Git).zip
(or clone the Bitbucket repository)

S. pombe Profiling Tools

ImageJ macros for cell profiling and montages for quantitative fluorescence microscopy.

Download (includes a documentation):

PombeProfilingTools.2012.12.09.zip

Please cite: Berro J and Pollard TD. Local and global analysis of endocytic patch dynamics in fission yeast. Molecular Biology of the Cell. 2014 Nov 5;25(22):3501-14. PMID: 25143395

Temporal Super-Resolution realignment

Simple Matlab demo of the temporal super-resolution realignment method:

DemoTemporalSuperResolution.zip

Please cite: Berro J and Pollard TD. Local and global analysis of endocytic patch dynamics in fission yeast. Molecular Biology of the Cell. 2014 Nov 5;25(22):3501-14. PMID: 25143395